CRYSTAL STRUCTURE AT 2.7A RESOLUTION OF A COMPLEX BETWEEN A STAPHYLOCOCCUS AUREUS DOMAIN AND A FAB FRAGMENT OF A HUMAN IGM ANTIBODY


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B-Cell Epitope
Epitope  
   
Complex PDB ID 1DEE
Accession Number 3DIEP0024
IEDB ID Not available in IEDB.
Epitope Sequence Q(22_H)+GF(25-26_H)+QS(28-29_H)+DD(32-33_H)+Q(36_H)+NV(39-40_H)+E(43_H)+L(47_H)
Starting Position22,25-26,28-29,32
Ending Position33,36,39-40,43,47
Epitope Type Discontinuous Epitope

Assay Information  
Assay Antigen Not available
PDB CategoryIMMUNE SYSTEM
Keyword FAB-IBP COMPLEX CRYSTAL STRUCTURE 2.7A RESOLUTION BINDING OUTSIDE THE ANTIGEN COMBINING SITE SUPERANTIGEN FAB VH3 SPECIFICITY; IMMUNE SYSTEM
Antibody Residues Interacting with Antigen Open in new window      Download dimplot pdb file
Antibody Chain 1 PDB Chain B,D
Antibody Chain 2 PDB ChainG,F
Antigen PDB ChainH
CommentsIt is a polypeptide of eight chain-A,B,C,D,E,F,G,H. Epitope residues has been identified in H chain.

Experimental Details
Method
X-RAY DIFFRACTION
Resolution
2.7
R-Value
0.225
Space Group
P 1 21 1
Unit Cell
Length(Å) Angle(°)
a = 68.52 α = 90
b = 78.91 β = 100.71
c = 163.24 γ = 90



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Source Information  
Structure Determination Method X-RAY DIFFRACTION
Source Organism Homo sapiens
Common Namehuman
Taxonomic ID9606
Source Organism Homo sapiens
Common Namehuman
Taxonomic ID9606
Entity ID2


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Ligand non-polymer