Camelid VHH Domains in Complex with Porcine Pancreatic alpha-Amylase


Tab-View Sample

Summary Sequence Methodology Gene Ontology Reference MolProbity Ag-Ab intPlot EpiViewer E-Links

B-Cell Epitope
Epitope  
   
Complex PDB ID 1KXV
Accession Number 3DIEP0249
IEDB ID 121103
Epitope Sequence Y17; P169; Y170; W218; P219; G220; D221; K223; K258; S260; E261; F263; G264; E297; G300; P303; R306
Starting Position17,169-170,218-221,223,258,260-261,263-264,297,300,303,306
Ending Position306
Epitope Type Discontinuous Epitope

Assay Information  
Assay Antigen Pancreatic alpha-amylase precursor Sus scrofa
PDB CategoryHYDROLASE; IMMUNE SYSTEM
Keyword BETA 8 ALPHA 8; BETA BARREL; HYDROLASE; IMMUNE SYSTEM
Antibody Residues Interacting with Antigen Open in new window      Download dimplot pdb file
Antibody Chain 1 PDB Chain A
Antibody Chain 2 PDB ChainC
Antigen PDB ChainC
Contact Area for Antigen 800.8
Contact Area for Antibody821
CommentsThe conformational changes in the antigen upon AMB7 VHH binding with regards to the native enzyme involve the 220-225; 237-241; and 348-354 loops. For 348-354 loop; the effect was larger in the complex with AMD9 VHH [PDB: 1KXQ] and weaker in the complexes with AMB7 [PDB: 1KXT] and AMD10 [PDB: 1KXV].

Experimental Details
Method
X-RAY DIFFRACTION
Resolution
1.6
R-Value
Space Group
P 1
Unit Cell
Length(Å) Angle(°)
a = 57.568 α = 98.78
b = 60.99 β = 100.88
c = 107.333 γ = 101.14



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Source Information  
Structure Determination Method X-RAY DIFFRACTION
Source Organism Sus scrofa
Common Namepig
Taxonomic ID9823
Entity ID1


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Ligand non-polymer